PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_E15759DAD.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 478aa    MW: 53570.1 Da    PI: 5.0123
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_E15759DAD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind95.65.2e-3028214103
                            GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
           HSF_DNA-bind  14 elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                            +++ ++sw   +nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i+r+k
  Traes_5BL_E15759DAD.1   2 ATDAVVSWGPANNSFIVWNTPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQKHLLKTINRRK 80 
                            57899****999*****************************************999.........**********************9 PP

                            XX CS
           HSF_DNA-bind 102 se 103
                             +
  Traes_5BL_E15759DAD.1  81 PS 82 
                            75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.36E-27179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-43179IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.9E-31279IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.0E-26379IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-102840IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043402953IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-104153IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
PATDAVVSWG PANNSFIVWN TPEFARDLLP KYFKHNNFSS FVRQLNTYGF RKVDPDKWEF  60
ANEGFLRGQK HLLKTINRRK PSHANNQVQV PQQQRHHQQQ HQQQPQLQNA PMPSCVEVGK  120
FGMEEEIEML KRDKNVLMQE LVRLRQQQQT TDHQLQTLGK RLHGMEQRQQ QMMSFLAKAM  180
QSPGFLAQFV QQNENSKRRI VAANKKRRLP KQDDGLNPES ALLDGQIIKY QPMINEAAKA  240
MLRKILQQDT SPHRFESMGN SDNLLLENCM PSAQTFDSSS STRNSAVTLA EVPGNSGMPY  300
MPTSSGLSAI CSSSTPPEMQ CPVLDSNSST QLPTQLPNMS AASSIPKAMT PGLSDISIPG  360
FPDLHDLITE DAINIPVENF AMPGPECIFP LPDEGSDDSV PMDPIDTDET DDTQKLPGII  420
DSFWEQFLCA SPLSIDNDEV DSGLLDTREA QEENGWTRTE NLANLTEQMG LLSSNHRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-2218231123Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085410.0KF208541.1 Triticum aestivum heat shock factor A1a (HsfA1a) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559114.10.0PREDICTED: heat stress transcription factor A-1-like
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLW5FJA80.0W5FJA8_WHEAT; Uncharacterized protein
STRINGBRADI1G01130.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-112heat shock factor 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]